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Polygenic Risk Scores for Breast Cancer in African Ancestry Populations: Transferability, Calibration, and Decision Thresholds
Author: Ssenkayi Julius
Publisher: IAA Journal of Biological Sciences
Published: 2026
Section: School of Pharmacy
Abstract
Polygenic risk scores (PRS) have emerged as promising tools for stratifying breast cancer risk and informing
screening and prevention strategies. However, their clinical utility in African ancestry populations remains limited
due to poor transferability, miscalibration, and uncertainty surrounding appropriate decision thresholds. Most
existing PRS are derived from genome-wide association studies (GWAS) conducted predominantly in European
ancestry populations, resulting in reduced predictive accuracy and systematic over- or underestimation of risk
when applied to individuals of African ancestry. This review examines the current evidence on the transferability
of breast cancer PRS to African ancestry populations, with particular emphasis on population-specific genetic
architecture, methodological challenges, calibration performance, and threshold derivation strategies. Empirical
findings consistently demonstrate diminished predictive performance and substantial miscalibration of European
derived PRS in African ancestry cohorts, raising concerns for equitable clinical implementation. We further
explore calibration methods, decision-curve analysis, and ancestry-sensitive thresholding approaches, highlighting
their implications for risk stratification, screening eligibility, and preventive interventions. Finally, we identify key
evidence gaps, including underrepresentation in GWAS, limited biobank infrastructure, and heterogeneity in
phenotype definitions, and propose future directions emphasizing multi-ancestry GWAS, integrative multi-omics
models, standardized reporting, and equity-centered implementation frameworks. Addressing these challenges is
essential to ensure that PRS-based breast cancer risk prediction contributes meaningfully and ethically to
precision medicine for African ancestry populations.